Flashcards: BIO131 Nucleic Acids and Molecular Biology — 69 cards

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1Question

How many lectures are in BIO131?

Answer

There are 14 lectures in BIO131.

2Question

What sessions make up the BIO131 practical component?

Answer

Two four-hour practical sessions on nucleic-acid and protein electrophoresis.

3Question

What attendance is required to validate BIO131?

Answer

Students must attend all lectures, tutorials, and practical sessions.

4Question

What happens if a student has an unjustified absence in BIO131?

Answer

It prevents validation of the module, semester, and year.

5Question

What percentage of the final grade do practical sessions contribute in BIO131?

Answer

Practical sessions contribute 30% of the final module grade.

6Question

How much is the week-43 multiple-choice test worth in BIO131?

Answer

It contributes 20% to the final module grade.

7Question

What is the weight of the week-51 final examination in BIO131?

Answer

The final examination contributes 50% of the final grade.

8Question

What must students bring to each BIO131 practical session?

Answer

Students must bring their practical booklet and their own lab coat.

9Question

Who discovered nuclein in 1869?

Answer

J. F. Miescher discovered nuclein in 1869.

10Question

What did Avery, Hershey, and Chase establish in 1952?

Answer

They established that DNA carries genetic information.

11Question

Who described the DNA double helix in 1953?

Answer

Watson, Crick, Wilkins, with Rosalind Franklin's contribution described the DNA double helix.

12Question

When was the Nobel Prize awarded for the DNA double helix discovery?

Answer

The Nobel Prize was awarded in 1962.

13Question

What does the central dogma state about DNA replication and transcription?

Answer

DNA directs its own replication and transcription into RNA.

14Question

According to the central dogma, what does RNA direct?

Answer

RNA directs translation into proteins.

15Question

Can information transfer from protein to protein or nucleic acid occur?

Answer

No, information cannot transfer from protein to protein or nucleic acid.

16Question

What three components make up a nucleotide?

Answer

A pentose sugar, a nitrogenous base, and one or more phosphate groups.

17Question

How is a nucleoside formed?

Answer

By a pentose sugar covalently linked to a nitrogenous base through an N-glycosidic bond.

18Question

Which bases does DNA contain?

Answer

Adenine, thymine, guanine, and cytosine.

19Question

Which bases does RNA contain?

Answer

Adenine, uracil, guanine, and cytosine.

20Question

What does a 3′–5′ phosphodiester bond link in nucleic acids?

Answer

The 3′ hydroxyl of one pentose to the 5′ hydroxyl of the next pentose.

21Question

What polarity do phosphodiester bonds give to nucleic-acid strands?

Answer

They give nucleic-acid strands their polarity.

22Question

How are DNA strands oriented relative to each other?

Answer

DNA strands are antiparallel.

23Question

In which direction does DNA polymerization proceed?

Answer

From 5′ to 3′ by adding nucleotides to a 3′ hydroxyl end.

24Question

How many chromosome pairs do human cells have?

Answer

23 chromosome pairs.

25Question

How many base pairs does Escherichia coli's chromosome have?

Answer

Approximately 4 × 10⁶ base pairs.

26Question

What shape is mitochondrial DNA in animal eukaryotic cells?

Answer

Circular.

27Question

What shape is nuclear DNA in animal eukaryotic cells?

Answer

Linear chromosomes.

28Question

What shape is chloroplast DNA in plant cells?

Answer

Circular.

29Question

How is eukaryotic DNA compacted into nucleosomes?

Answer

By wrapping 146 base pairs around a histone octamer.

30Question

What are the main cytoplasmic RNA categories?

Answer

rRNA, tRNA, and mRNA.

31Question

Which cytoplasmic RNA represents about 80% of total RNA?

Answer

rRNA.

32Question

What is the melting temperature (Tm) of DNA?

Answer

The temperature where 50% of DNA molecules become single stranded.

33Question

What does the Beer–Lambert law relate in spectrophotometry?

Answer

Absorbance to concentration using Aλ=ελlcA_\lambda = \varepsilon_\lambda l c.

34Question

At which wavelength are nucleic acids quantified?

Answer

At 260 nm wavelength.

35Question

What does the A260/A280 ratio assess?

Answer

Protein contamination in nucleic acid samples.

36Question

What A260/A280 ratio indicates pure DNA?

Answer

A ratio between 1.8 and 2.

37Question

What does an A260/A280 ratio below 1.7 indicate?

Answer

Protein contamination in the DNA solution.

38Question

What does an A260/A280 ratio above 2 indicate?

Answer

RNA contamination in the DNA solution.

39Question

How is DNA replication described in terms of strand conservation?

Answer

DNA replication is semiconservative.

40Question

From where does DNA replication initiate and how does it proceed?

Answer

It starts from one origin and proceeds bidirectionally.

41Question

Where do DNA polymerases add nucleotides during replication?

Answer

Only to a primer-bound template at a 3′ hydroxyl end.

42Question

In which direction does newly synthesized DNA grow?

Answer

From 5′ to 3′ direction.

43Question

How is the lagging strand synthesized during DNA replication?

Answer

As 150–200-nucleotide Okazaki fragments starting with RNA primers.

44Question

Which enzyme joins Okazaki fragments on the lagging strand?

Answer

DNA ligase joins Okazaki fragments.

45Question

What components does PCR use to amplify DNA?

Answer

PCR uses thermostable Taq polymerase, two primers, and thermal cycles.

46Question

How many DNA copies does 20 PCR cycles theoretically produce?

Answer

About 2²⁰ or approximately 10⁶ copies of the initial duplex.

47Question

In which direction does transcription copy the DNA template strand?

Answer

From 5′ to 3′ direction.

48Question

Which RNA polymerase transcribes mRNA genes in eukaryotes?

Answer

RNA polymerase II.

49Question

How is eukaryotic pre-mRNA stabilized?

Answer

By 5′ capping, poly(A) tail addition, and intron splicing.

50Question

Where does translation occur in the cell?

Answer

In the cytoplasm.

51Question

What is the first stage of translation?

Answer

Initiation at an AUG codon.

52Question

What happens during elongation in translation?

Answer

Codon reading and amino-acid addition.

53Question

What triggers termination in translation?

Answer

A stop codon.

54Question

What does a genomic library represent compared to a cDNA library?

Answer

A genomic library represents the entire genome, while a cDNA library represents only expressed transcripts.

55Question

What is the first step in cloning a gene?

Answer

Isolating the gene is the first step in cloning.

56Question

What is the final step after replicating a gene in a host organism during cloning?

Answer

The gene is analyzed after replication in the host.

57Question

Name one application of genetic engineering methods.

Answer

Genetic engineering can create genetically modified organisms.

58Question

What is a restriction enzyme?

Answer

A restriction enzyme is a restriction endonuclease that cleaves both DNA strands at a specific recognition site.

59Question

What are the main steps in plasmid cloning?

Answer

Plasmid cloning involves restriction digestion, ligation, bacterial transformation, selection, and amplification.

60Question

What is a plasmid?

Answer

A plasmid is a small circular, double-stranded, autonomous, extrachromosomal bacterial DNA molecule.

61Question

What key components does a plasmid cloning vector contain?

Answer

It contains an origin of replication, selectable resistance genes, and a multiple cloning site.

62Question

What does agarose-gel electrophoresis separate DNA fragments by?

Answer

By their size.

63Question

What is the purpose of a molecular-weight marker in agarose-gel electrophoresis?

Answer

To provide fragments of defined lengths for calibration.

64Question

What does Southern blotting transfer to a membrane?

Answer

Separated DNA fragments.

65Question

How does Southern blotting detect a complementary DNA sequence?

Answer

By hybridization with a labeled probe.

66Question

What does Sanger sequencing detect to verify a cloned insert?

Answer

Fluorescence signals from incorporated chain-terminating nucleotides.

67Question

Which author is associated with the sequencing method detecting fluorescence from chain terminators?

Answer

Sanger.

68Question

Name one principal molecular-biology enzyme activity.

Answer

Polymerase.

69Question

Name another principal molecular-biology enzyme activity besides polymerase.

Answer

Exonuclease.

Test yourself with the quiz

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1. Which combination accurately describes the BIO131 teaching schedule?

2. What is the consequence of an unjustified absence from a BIO131 session?

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